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| Song | Album | Track | Time | Remarks |
| Acoustic Set | Farewell | 09 | 10:04 | Live ft. Greg X. Volz |
| Adonai | Beat The System Power Praise The Ultimate Collection 1 | 10 07 16 | 4:42 | |
| Adonai | Back To The Rock | 10 | 4:30 | New recording |
| All About Who You Know | Jekyll & Hyde | 02 | 2:35 | |
| All About Who You Know | Farewell | 01 | 3:22 | Live |
| All Fired Up | On Fire! Petra Means Rock War & Remembrance 2 Petrafied: The Best Of Petra Rock Block The Ultimate Collection 2 | 01 09 09 14 12 04 | 4:30 | |
| All The King's Horses | This Means War! | 10 | 4:17 | |
| All Over Me | More Power To Ya | 07 | 5:51 | |
| Altar Ego | Back To The Street | 09 | 4:43 | First song with John |
| A Matter Of Time | God Fixation Greatest Hits Vol. 1 | 03 03 | 3:24 | |
| Amazing Grace | Revival | 05 | 4:16 | |
| Amazing Grace | Farewell | 03 | 4:29 | Live |
| Amigos | Petra En Alabanza | 11 | 4:20 | |
| Amo Al Señor | Petra En Alabanza | 01 | 3:35 | |
| Ancient Of Days | Petra Praise 2: We Need Jesus The Power Of Praise | 08 01 | 3:52 | |
| Angel Of Light | Never Say Die Petra Means Rock War & Remembrance 1 Rock Block | 03 13 06 02 | 4:21 | |
| Angel Of Light | Back To The Rock | 03 | 4:28 | New recording |
| Another Crossroad | Back To The Street | 06 | 3:50 | |
| Armed And Dangerous | Beyond Belief Still Means War | 01 03 | 4:06 | |
| Así Es Nuestra Vida | Jekyll & Hyde (En Español) | 08 | 3:27 | |
| Ask Him In | Come And Join Us | 08 (LP) 02 (CD) | 3:31 | |
| Backslidin' Blues | Petra The Ultimate Collection 1 | 05 02 | 4:31 | |
| Back To The Rock | Back To The Rock | 11 | 4:42 | |
| Back To The Street | Back To The Street War & Remembrance 2 | 01 02 | 4:14 | |
| Beat The System | Beat The System War & Remembrance 1 The Ultimate Collection 1 | 01 14 12 | 4:22 | |
| Beat The System | Captured In Time And Space | 02 | 4:46 | Live |
| Beat The System | Double Take | 07 | 4:34 | New recording |
| Believer In Deed | Wake-up Call | 08 | 4:06 | |
| Bema Seat | Not Of This World | 03 | 3:54 | |
| Bema Seat | Back To The Rock | 01 | 3:57 | New recording |
| Be Of Good Cheer | Petra Praise 2: We Need Jesus | 03 | 3:55 | |
| Better Is One Day | Revival | 07 | 4:36 | |
| Beyond Belief | Beyond Belief The Ultimate Collection 2 The Definitive Collection | 04 07 03 | 5:02 | Dove Award |
| Beyond Belief | Double Take | 04 | 4:22 | New recording |
| Beyond Belief | Farewell | 12 | 4:30 | Live |
| Blessed Be Your Name | Vertical Expressions | 09 | 3:18 | |
| Blinded Eyes | Not Of This World | 05 | 5:33 | |
| Breathe In | Double Take | 09 | 4:57 | Lead vocals Pete Orta |
| Chameleon | Never Say Die War & Remembrance 1 Rock Block The Early Years The Coloring Song | 02 05 14 05 05 | 5:47 | |
| Clamaré A Mi Señor | Petra En Alabanza | 12 | 3:48 | |
| Clean | Beat The System Petra Means Rock War & Remembrance 1 | 03 07 16 | 3:01 | |
| Clean | Captured In Time And Space | 05 | 3:02 | Live |
| Clean | Back To The Rock | 02 | 3:05 | New recording |
| Come And Join Us | Come And Join Us War & Remembrance 1 | 05 01 | 4:39 | |
| Come, Now Is The Time | Vertical Expressions | 01 | 4:06 | |
| Computer Brains | Beat The System War & Remembrance 1 | 02 15 | 4:01 | |
| Computer Brains | Captured In Time And Space | 04 | 3:14 | Live |
| (Couldn't Find Love) Without You | Washes whither than | 07 | 4:19 | Never released on CD |
| Counsel Of The Holy | On Fire! Petra Means Rock Rock Block | 06 16 03 | 3:37 | |
| Creed | Beyond Belief The Ultimate Collection 2 The Definitive Collection | 03 08 07 | 4:35 | |
| Creed | Double Take The Power Of Praise | 10 14 | 4:49 | New recording |
| Creed | Farewell | 05 | 3:14 | Live |
| Cristo Glorioso Rey | Petra En Alabanza | 03 | 2:18 | |
| Dance | Unseen Power The Ultimate Collection 2 The Definitive Collection | 06 11 02 | 3:44 | |
| Dance | Double Take | 03 | 3:39 | New recording |
| Dance | Farewell | 02 | 4:32 | Live |
| Dead Reckoning | This Means War! | 09 | 3:23 | |
| Deep Love | Washes Whiter Than | 10 | 3:57 | |
| Defector | On Fire! | 05 | 4:30 | |
| Destiny | Unseen Power The Definitive Collection | 01 04 | 4:28 | Dove Award |
| Disciple | More Power To Ya | 10 | 3:29 | Lead vocals Greg & Mark |
| Don't Let Your Heart Be Hardened | This Means War! War & Remembrance 2 Petrafied: The Best Of Petra Petraphonics | 08 06 13 12 | 3:41 | |
| Draw Me Close | Vertical Expressions | 04 | 3:59 | |
| El Rey De Gloria Entrará | Petra En Alabanza | 07 | 3:10 | |
| Enter In | No Doubt Greatest Hits Vol. 1 | 01 06 | 5:00 | |
| Falling Up | God Fixation | 04 | 4:25 | |
| Father Of Lights | Never Say Die The Early Years The Coloring Song | 09 09 09 | 3:02 | |
| First Love | On Fire! War & Remembrance 2 Petrafied: The Best Of Petra Petraphonics | 04 11 15 13 | 4:10 | |
| Fool's Gold | Back To The Street Petraphonics | 08 10 | 4:48 | |
| For All You're Worth | No Doubt Greatest Hits Vol. 1 | 10 02 | 4:11 | |
| For Annie | Never Say Die The Ultimate Collection 1 | 08 06 | 4:24 | |
| For Annie | Farewell | 09 | -- | Live - Part of Acoustic Set |
| Friends (All In The Family Of God) | Petra Praise: The Rock Cries Out | 12 | 4:20 | |
| Get Back To The Bible | Petra | 06 | 2:21 | |
| Get On Your Knees And Fight Like A Man | This Means War! Petra Means Rock War & Remembrance 2 Rock Block | 03 02 07 13 | 4:32 | |
| God Fixation | God Fixation Greatest Hits Vol. 1 Still Means War | 06 10 06 | 2:54 | |
| God Gave Rock And Roll To You | Come And Join Us The Definitive Collection | 01 10 | 5:37 | |
| God Gave Rock And Roll To You (Reprise) | Come And Join Us | 09 | 2:50 | |
| God Gave Rock And Roll To You | Beat The System Petra Means Rock Rock Block The Ultimate Collection 1 | 06 17 15 14 | 3:54 | New recording |
| God Gave Rock And Roll To You | Captured In Time And Space | 23 | 1:19 | Live |
| God Of Wonders | Vertical Expressions | 03 | 4:44 | |
| Godpleaser | Not Of This World | 10 | 4:35 | |
| Godpleaser | Captured In Time And Space | 29 | 4:51 | Live |
| Godpleaser | Back To The Rock | 05 | 4:44 | New recording |
| Gonna Fly Away | Petra | 07 | 4:55 | |
| Good News | Wake-up Call | 02 | 4:29 | |
| Grave Robber | Not Of This World War & Remembrance 1 Petraphonics The Ultimate Collection 1 | 04 12 07 11 | 4:18 | |
| Grave Robber | Captured In Time And Space | 06 | 4:24 | Live |
| Grave Robber | Farewell | 10 | 4:20 | Live |
| Grave Robber | Back To The Rock | 09 | 4:51 | New recording |
| Hallelujah Chorus | Captured In Time And Space | 27 | 0:59 | |
| Hallowed Be Thy Name | Petra Praise: The Rock Cries Out | 11 | 4:12 | |
| Hand On My Heart | Unseen Power | 04 | 4:24 | |
| Heart Of A Hero | No Doubt Still Means War | 03 05 | 4:08 | |
| He Came, He Saw, He Conquered | This Means War! Petra Means Rock Rock Block The Ultimate Collection 2 | 02 11 08 03 | 4:10 | |
| He Came, He Saw, He Conquered | Farewell | 14 | 4:36 | Live |
| He Came, He Saw | Double Take | 06 | 4:14 | New recording |
| He's Been In My Shoes | Wake-up Call | 04 | 4:22 | |
| Hello Again | God Fixation | 02 | 3:40 | Drums Kevin Brandow |
| Here I Am To Worship | Vertical Expressions | 05 | 4:47 | |
| Hey World | Unseen Power | 09 | 3:49 | |
| Hit You Where You Live | On Fire! Petra Means Rock War & Remembrance 2 Rock Block | 02 03 10 07 | 4:20 | |
| Hollow Eyes | Beat The System Petrafied: The Best Of Petra Petraphonics The Ultimate Collection 1 | 08 09 08 15 | 4:03 | |
| Hollow Eyes | Captured In Time And Space | 11 | 4:01 | Live |
| Holy Ghost Power | Come And Join Us | 02 (LP) 07 (CD) | 2:27 | |
| Homeless Few | On Fire! | 10 | 4:33 | |
| How Long | Revival | 11 | 4:06 | |
| I Am Available | This Means War! War & Remembrance 2 Petraphonics | 04 08 11 | 4:27 | |
| I'm Not Ashamed | Petra | 08 | 3:03 | |
| I Am On The Rock | Beyond Belief The Definitive Collection | 02 08 | 4:34 | |
| I Am On The Rock | Farewell | 07 | -- | Live - Part of Rock Medley |
| I'm Thankful | Washes Whiter Than The Early Years The Coloring Song | 01 06 06 | 2:41 | |
| I Can Be Friends With You | Never Say Die | 07 | 4:12 | |
| I Don't Want To Fall Away From You | No Compromise | 05 | 4:02 | Keith Green tribute |
| If I Had To Die For Someone | God Fixation | 01 | 4:39 | |
| I Love The Lord | Petra Praise: The Rock Cries Out The Ultimate Collection 2 The Definitive Collection | 01 10 01 | 3:35 | |
| I Love You Lord | Petra Praise 2: We Need Jesus The Power Of Praise The Ultimate Collection 2 | 05 10 10 | 3:53 | First pressing only |
| I Need To Hear From You | Unseen Power | 05 | 4:02 | |
| In The Likeness Of You | Unseen Power The Power Of Praise | 10 06 | 4:51 | |
| It Is Finished | Beat The System The Ultimate Collection 1 | 04 13 | 3:52 | |
| It Is Finished | Captured In Time And Space | 31 | 4:05 | Live |
| It Is Finished | Farewell | 07 | -- | Live - Part of Rock Medley |
| It Is Finished (Reprise) | Farewell | 07 | -- | Live - Part of Rock Medley |
| I Waited For The Lord | Petra Praise 2: We Need Jesus The Power Of Praise | 09 07 | 2:47 | |
| I Will Call Upon The Lord | Petra Praise: The Rock Cries Out | 13 | 3:48 | |
| I Will Celebrate / When The Spirit Of The Lord | Petra Praise: The Rock Cries Out The Power Of Praise | 09 08 | 4:15 | |
| I Will Seek You | Jekyll & Hyde | 07 | 2:34 | |
| I Will Sing Praise | Petra Praise: The Rock Cries Out The Power Of Praise | 10 12 | 2:45 | |
| Jekyll & Hyde | Jekyll & Hyde The Ultimate Collection 2 | 01 13 | 3:04 | |
| Jekyll & Hyde | Jekyll & Hyde (En Español) | 01 | 3:04 | |
| Jekyll & Hyde | Farewell | 08 | 3:49 | Live |
| Jesus, Friend Of Sinners | Revival | 06 | 3:32 | |
| Jesus, Jesus, Glorious One | Petra Praise: The Rock Cries Out The Power Of Praise | 03 05 | 2:18 | |
| Judas' Kiss | More Power To Ya Petra Means Rock Rock Block The Ultimate Collection 1 | 04 14 09 07 | 4:43 | |
| Judas' Kiss | Captured In Time And Space | 14 | 2:49 | Live |
| Judas' Kiss | Double Take | 01 | 4:05 | New recording |
| Judas' Kiss | Vertical Expressions | 11 | 4:04 | Live |
| Just Reach Out | Wake-up Call Greatest Hits Vol. 1 The Ultimate Collection 2 The Definitive Collection | 10 05 14 05 | 4:28 | |
| Just Reach Out | Double Take | 12 | 4:36 | New recording |
| Kenaniah | This Means War! | 05 | 3:45 | |
| Killing My Old Man | Never Say Die Petra Means Rock Rock Block | 04 04 11 | 3:46 | |
| King Of Kings | Petra Praise: The Rock Cries Out | 02 | 1:47 | |
| King's Ransom | Back To The Street | 04 | 4:18 | |
| La Batalla Es De Nuestro Señor | Petra En Alabanza | 04 | 3:04 | |
| La Prueba | Jekyll & Hyde (En Español) | 06 | 3:01 | |
| La Salvación Es De Nuestro Dios | Petra En Alabanza | 06 | 2:56 | |
| Last Daze | Beyond Belief | 08 | 5:01 | |
| Let Everything That Hath Breath | More Power To Ya Petra Means Rock Petrafied: The Best Of Petra Power Praise | 08 15 06 05 | 4:21 | |
| Let Everything That Hath Breath | Captured In Time And Space | 24 | 2:18 | Live |
| Let Everything That Hath Breath (Praise The Lord) | Back To The Rock | 08 | 4:14 | New recording |
| Let Our Voices Rise Like Incense | Petra Praise 2: We Need Jesus | 07 | 2:29 | |
| Life As We Know It | Jekyll & Hyde | 08 | 3:27 | |
| Lift Him Up | Not Of This World Power Praise | 07 06 | 3:26 | |
| Lo Que Pudo Ser | Jekyll & Hyde (En Español) | 04 | 2:58 | |
| Lord, I Lift Your Name On High | Petra Praise 2: We Need Jesus The Power Of Praise The Ultimate Collection 2 | 02 04 16 | 3:02 | |
| Lord, I Lift Your Name On High | Vertical Expressions | 10 | 3:18 | Live |
| Lord, Reign In Me | Vertical Expressions | 07 | 3:03 | |
| Love | Beyond Belief Greatest Hits Vol. 1 The Ultimate Collection 2 | 05 04 06 | 4:11 | |
| Love | Farewell | 09 | -- | Live - Part of Acoustic Set |
| Lovely Lord | Petra Praise 2: We Need Jesus | 10 | 4:25 | |
| Lucas McGraw | Petra | 03 | 3:24 | |
| Magic Mirror | Washes Whiter Than | 04 | 3:27 | |
| Magic Words | Washes Whiter Than | 09 | 3:31 | Never released on CD |
| Magnet Of The World | God Fixation | 08 | 3:44 | |
| Marks Of The Cross | Wake-up Call | 09 | 4:35 | |
| Mary's Song | Washes Whiter Than The Early Years The Coloring Song | 05 08 08 | 4:00 | |
| Medley | Petra Praise 2: We Need Jesus | 11 | 5:58 | |
| Meet With Me | Revival | 08 | 3:28 | |
| Midnight Oil | Wake-up Call Greatest Hits Vol. 1 | 01 09 | 3:17 | |
| Midnight Oil | Farewell | 07 | -- | Live - Part of Rock Medley |
| Mine Field | On Fire! The Ultimate Collection 2 | 03 05 | 4:28 | |
| Mine Field | Farewell | 07 | -- | Live - Part of Rock Medley |
| Moldéame | Jekyll & Hyde (En Español) | 09 | 3:03 | |
| More Power To Ya | More Power To Ya War & Remembrance 1 Petrafied: The Best Of Petra Petraphonics The Ultimate Collection 1 | 03 09 05 04 08 | 3:37 | |
| More Power To Ya | Captured In Time And Space | 17 | 2:41 | Live |
| More Power To Ya | Farewell | 09 | -- | Live - Part of Acoustic Set |
| More Power To Ya | Back To The Rock | 07 | 3:35 | New recording |
| More Than A Thousand Words | No Doubt | 04 | 4:53 | |
| Morning Star | Washes Whiter Than | 03 | 4:47 | |
| Mountains And Valleys | Petra | 02 | 2:49 | |
| My Redeemer Lives | Vertical Expressions | 06 | 3:03 | |
| Never Say Die | Never Say Die The Early Years The Coloring Song | 06 03 03 | 3:42 | |
| No Doubt | No Doubt The Ultimate Collection 2 The Definitive Collection | 05 15 06 | 4:53 | |
| No Doubt | Farewell | 09 | -- | Live - Part of Acoustic Set |
| Not By Sight | Not Of This World Petra Means Rock War & Remembrance 1 Petrafied: The Best Of Petra Rock Block | 06 08 13 08 04 | 3:20 | |
| Not By Sight | Captured In Time And Space | 13 | 1:24 | Live |
| Not Of This World | Not Of This World War & Remembrance 1 Petrafied: The Best Of Petra Petraphonics The Ultimate Collection 1 | 02 11 07 06 10 | 4:49 | |
| No Weapon Formed Against Us | Petra Praise: The Rock Cries Out Still Means War | 08 13 | 1:44 | |
| Oasis | Revival | 03 | 3:56 | |
| Occupy | Not Of This World | 09 | 3:28 | |
| Only By Grace | Petra Praise 2: We Need Jesus | 11 | -- | Part of Medley |
| Onward, Christian Soldiers | Our Hymns Still Means War | 10 04 | 3:48 | |
| Open Book | On Fire! | 08 | 4:28 | |
| Our Turn Now | Carman - Addicted to Jesus | 01 | 5:32 | ft. Petra |
| Over The Horizon | God Fixation | 05 | 4:37 | |
| Pacto De Amor | Jekyll & Hyde (En Español) | 10 | 3:50 | |
| Párate | Jekyll & Hyde (En Español) | 03 | 3:19 | |
| Parting Thought | Petra War & Remembrance 2 | 01 12 | 1:30 | |
| Perfect World | Jekyll & Hyde | 05 | 3:13 | |
| Pied Piper | Not Of This World | 08 | 4:00 | |
| Power Praise | Power Praise | 01 | 4:57 | |
| Praise Ye The Lord | Never Say Die Petra Means Rock Petrafied: The Best Of Petra Power Praise The Early Years The Coloring Song The Ultimate Collection 1 | 10 10 04 03 01 01 04 | 3:18 | |
| Praise Ye The Lord | Captured In Time And Space | 26 | 2:29 | Live |
| Prayer | Beyond Belief The Ultimate Collection 2 | 10 09 | 4:14 | |
| Praying Man | Wake-up Call | 05 | 4:25 | |
| Praying Man | Double Take | 11 | 4:30 | New recording |
| ¿Quién Es Tu Conécte Allá? | Jekyll & Hyde (En Español) | 02 | 2:35 | |
| Radio Daze | Petraphonics | 01 | 5:17 | |
| Ready, Willing And Able | Unseen Power Still Means War | 03 02 | 4:11 | |
| Rey De Reyes | Petra En Alabanza | 02 | 1:47 | |
| Right Place | No Doubt Still Means War | 06 12 | 3:36 | |
| Right Place | Farewell | 06 | 3:57 | Live |
| Road To Zion | More Power To Ya War & Remembrance 1 Petraphonics | 09 10 05 | 3:59 | |
| Road To Zion | Captured In Time And Space | 16 | 1:16 | Live |
| Road To Zion | Farewell | 09 | -- | Live - Part of Acoustic Set |
| Rock Medley | Farewell | 07 | 10:05 | Live |
| Rose Colored Stained Glass Windows | More Power To Ya The Ultimate Collection 1 | 05 09 | 4:16 | |
| Rose Colored Stained Glass Windows | Farewell | 09 | -- | Live - Part of Acoustic Set |
| Rose Colored Stained Glass Windows | Back To The Rock | 04 | 4:11 | New recording |
| Run For Cover | Back To The Street | 07 | 3:15 | |
| Run For The Prize | More Power To Ya | 06 | 4:31 | |
| Sacred Trust | Jekyll & Hyde | 10 | 3:52 | |
| St. Augustine's Pears | God Fixation | 10 | 3:48 | |
| Sally | Come And Join Us | 03 (CD) 04 (LP) | 4:26 | |
| Salvation Belongs To Our God | Petra Praise: The Rock Cries Out The Power Of Praise | 06 03 | 2:56 | |
| Second Wind | More Power To Ya Petra Means Rock War & Remembrance 1 Rock Block | 02 06 08 06 | 4:32 | |
| Second Wind | Back To The Rock | 06 | 4:34 | New recording |
| Secret Weapon | Unseen Power Still Means War | 07 08 | 4:01 | |
| Seen And Not Heard | Beyond Belief | 07 | 3:54 | |
| Send Revival, Start With Me | Revival | 01 | 5:29 | |
| Señor Llévame A Tus Atrios | Petra En Alabanza | 05 | 4:11 | |
| Set For Life | God Fixation | 07 | 3:55 | |
| Shadow Of A Doubt | God Fixation | 09 | 3:27 | |
| Shakin' The House | Back To The Street Petra Means Rock Rock Block | 03 05 05 | 4:28 | |
| Show Your Power | Petra Praise 2: We Need Jesus Still Means War | 04 14 | 4:10 | |
| Sight Unseen | Unseen Power The Ultimate Collection 2 | 08 12 | 3:56 | |
| Sight Unseen | Farewell | 07 | -- | Live - Part of Rock Medley |
| Sincerely Yours | No Doubt | 08 | 4:08 | |
| Sleeping Giant | Wake-up Call Still Means War | 07 10 | 5:28 | |
| Somebody's Gonna Praise His Name | On Fire! Power Praise | 07 10 | 4:02 | |
| Song Of Moses Rev. 15:3-4 | Petra Praise 2: We Need Jesus Greatest Hits Vol. 1 | 01 01 | 4:17 | |
| Speak To The Sky | Beat The System | 09 | 4:16 | |
| Speak To The Sky | Captured In Time And Space | 09 | 4:06 | Live |
| Stand | Jekyll & Hyde | 03 | 3:19 | |
| Stand In The Gap | On Fire! | 09 | 4:10 | |
| Stand Up | More Power To Ya Petra Means Rock War & Remembrance 1 Rock Block | 01 01 07 10 | 3:33 | |
| Stand Up | Captured In Time And Space | 12 | 1:59 | Live |
| Storm Comin' | Petra | 09 | 4:31 | |
| Strong Convictions | Wake-up Call | 03 | 3:53 | |
| Take Me In | Petra Praise: The Rock Cries Out | 05 | 4:11 | |
| Taste And See | Washes Whiter Than The Early Years The Coloring Song | 08 02 02 | 3:23 | |
| Te Adoro | Jekyll & Hyde (En Español) | 07 | 2:33 | |
| Te Alabo | Petra En Alabanza | 09 | 2:45 | |
| Te Exaltamos | Petra En Alabanza | 13 | 3:46 | |
| Test Of Time | Jekyll & Hyde | 06 | 3:00 | |
| Test Of Time | Farewell | 04 | 3:22 | Live |
| Thankful Heart | Back To The Street War & Remembrance 2 Petrafied: The Best Of Petra Petraphonics The Ultimate Collection 2 | 10 04 10 09 01 | 3:17 | |
| The Battle Belongs To The Lord | Petra Praise: The Rock Cries Out Still Means War | 04 11 | 3:04 | |
| The Coloring Song | Never Say Die War & Remembrance 1 Petrafied: The Best Of Petra Petraphonics The Early Years The Coloring Song The Ultimate Collection 1 | 01 04 03 03 04 04 05 | 2:52 | |
| The Coloring Song | Captured In Time And Space | 15 | 1:08 | Live |
| The Coloring Song | Double Take | 02 | 3:28 | New recording |
| The Coloring Song | Farewell | 09 | -- | Live - Part of Acoustic Set |
| The Great I Am | Captured In Time And Space | -- | -- | Cassette only release |
| The Holiest Name | Petra Praise 2: We Need Jesus The Power Of Praise | 06 09 | 3:34 | |
| The Invitation | God Fixation | 11 | 4:29 | |
| The King Of Glory Shall Come In | Petra Praise: The Rock Cries Out Greatest Hits Vol. 1 | 07 07 | 3:10 | |
| The Longing | Double Take | 05 | 2:56 | |
| The Mellow Medley | Captured in time and space | 15-17 | 5:05 | |
| The Noise We Make | Revival | 02 | 5:05 | |
| The Praise Medley | Captured in time and space War & Remembrance 2 | 24-27 01 | 8:33 | |
| The Prodigal's Song | Revival | 04 | 4:03 | |
| The Rock Block | Rock Block | 01 | 8:12 | |
| The Rock Medley | Captured in time and space | 12-14 | 6:12 | |
| The Water Is Alive | This Means War! | 07 | 3:48 | |
| Think On These Things | No Doubt | 09 | 4:23 | |
| Think Twice | No Doubt | 02 | 4:19 | |
| Think Twice | Farewell | 07 | -- | Live - Part of Rock Medley |
| This Means War! | This Means War! War & Remembrance 2 Petrafied: The Best Of Petra The Ultimate Collection 2 | 01 05 12 02 | 3:30 | |
| This Means War! | Farewell | 07 | -- | Live - Part of Rock Medley |
| This Means War! | Double Take Greatest Hits Vol. 1 Still Means War | 08 08 07 | 5:40 | New recording |
| Till Everything I Do | Jekyll & Hyde | 09 | 3:03 | |
| To Him Who Sits On The Throne | Petra Praise 2: We Need Jesus | 11 | -- | Part of Medley |
| Too Big To Fail | Back To The Rock | 12 | 4:25 | |
| Trading My Sorrows | Vertical Expressions | 02 | 4:13 | |
| Tu Nombre Santo Es | Petra En Alabanza | 10 | 4:12 | |
| Two Are Better Than One | No Doubt | 07 | 3:41 | |
| Underground | Beyond Belief Still Means War | 06 09 | 4:29 | |
| Underneath The Blood | Wake-up Call | 06 | 3:30 | |
| Un Mundo Perfecto | Jekyll & Hyde (En Español) | 05 | 3:13 | |
| Visions (Doxology) | Not Of This World | 01 | 2:04 | |
| Visions (Doxology) (Reprise) | Not Of This World | 11 | 2:28 | |
| Voice In The Wind | Beat The System | 05 | 4:30 | |
| Wake Up | Petra | 04 | 3:41 | |
| Walkin' In The Light | Petra The Ultimate Collection 1 | 01 01 | 3:17 | |
| We Exalt Thee | Petra Praise: The Rock Cries Out The Power Of Praise | 14 11 | 3:46 | |
| We Fall Down | Vertical Expressions | 08 | 3:04 | |
| We Hold Our Hearts Out To You | No Doubt | 11 | 4:11 | |
| We Hold Our Hearts Out To You | The Power Of Praise | 13 | 4:18 | Hot mix |
| We Need Jesus | Petra Praise 2: We Need Jesus The Power Of Praise The Ultimate Collection 2 The Definitive Collection | 12 02 17 09 | 4:14 | |
| We Want To See Jesus Lifted High | Revival | 10 | 3:02 | |
| What's In A Name | Beyond Belief | 09 | 3:32 | |
| Where Can I Go | Come And Join Us | 06 | 3:52 | |
| Who Do You Listen To? | Songs For A Small Circle Of Friends | 06 | 4:36 | Netherlands only release |
| Who's On The Lord's Side | Unseen Power Still Means War | 02 01 | 3:53 | |
| Whole World | Back To The Street War & Remembrance 2 Petrafied: The Best Of Petra | 05 03 11 | 4:50 | |
| Why Should The Father Bother? | Washes Whiter Than War & Remembrance 1 Petrafied: The Best Of Petra Petraphonics The Early Years The Coloring Song The Ultimate Collection 1 | 02 02 01 02 07 07 03 | 3:46 | |
| Witch Hunt | Beat The System | 07 | 4:34 | |
| Without Him We Can Do Nothing | Never Say Die Petra Means Rock Power Praise | 05 12 04 | 3:26 | |
| Without Him We Can Do Nothing | Captured In Time And Space | 25 | 2:37 | Live |
| Without You (I Would Surely Die) | Come And Join Us | 04 (CD) 07 (LP) | 4:27 | |
| Woman Don't You Know | Come And Join Us | 08 (CD) 03 (LP) | 3:41 | |
| Woulda, Shoulda, Coulda | Jekyll & Hyde | 04 | 2:58 | |
| Yahweh Love | Washes Whiter Than War & Remembrance 1 Petrafied: The Best Of Petra Power Praise The Early Years The Coloring Song | 06 03 02 02 10 10 | 5:38 | |
| Yo Celebraré / El Espíritu De Dios | Petra En Alabanza | 08 | 4:15 | |
| You Are Holy | Petra Praise 2: We Need Jesus | 11 | -- | Part of Medley |
| You Are I Am | Back To The Street Power Praise | 02 08 | 3:08 | |
| You Are My Rock | This Means War! Power Praise | 06 09 | 4:21 | |
| You Satisfy | Revival | 09 | 4:26 |
| Song | Album | Track | Time | Remarks |
| Can't Get Away | Unfit For Swine | 03 | 4:18 | |
| Carry On | The Grafting | 10 | 4:50 | |
| Carry The Burden | Shake | 06 | 4:19 | |
| Don't Have To Take It | Unfit For Swine | 10 | 3:48 | |
| Don't Look Back | Shake | 02 | 3:47 | |
| Double Checkin' | Hope Marches On 6-song Demo | 04 | 3:24 | unreleased |
| Face Of God | The Grafting | 04 | 4:20 | |
| First Song | The Grafting | 06 | 3:55 | track 08 on first pressing |
| God Is Too Big | Unfit For Swine | 02 | 3:42 | |
| Gravity | The Grafting | 09 | 4:16 | |
| Helping Hand | Unfit For Swine | 07 | 4:49 | |
| Here With Me | Hope Marches On 6-song Demo | 03 | 3:35 | unreleased |
| Hope Marches On | Hope Marches On 6-song Demo | 05 | 4:49 | unreleased |
| I Killed A Man | Unfit For Swine | 09 | 3:57 | |
| Inside Of You | Shake | 04 | 4:44 | |
| It's About Love | Hope Marches On 6-song Demo | 01 | 3:27 | unreleased |
| I'm OK | Hope Marches On | -- | -- | unreleased |
| Keep Your Light On | The Grafting | 02 | 3:25 | |
| Let It Show | Shake | 05 | 4:31 | |
| Lord Have Mercy | The Grafting | 08 | 4:02 | track 06 on first pressing |
| Need I Remind You | Unfit For Swine | 05 | 4:15 | |
| One By One | Shake | 07 | 4:00 | |
| Only Men | The Grafting | 03 | 4:26 | |
| Ready To Go | Re:Newal - The Art Of Community | 09 | 4:12 | |
| Save Me | Unfit For Swine | 01 | 3:37 | |
| Show Me The Way | Shake | 03 | 4:18 | |
| Stand | The Grafting | 01 | 4:08 | |
| Take You On | Unfit For Swine | 06 | 3:53 | |
| The Grafting | The Grafting | 05 | 3:51 | track 07 on first pressing |
| The Hard Way | Shake | 09 | 3:32 | |
| The Road To Calvary | Shake | 10 | 4:50 | |
| There Is Someone | Unfit For Swine | 08 | 3:45 | |
| Try Understanding His Heart | Shake | 08 | 3:55 | |
| Wake The Dead | Shake | 01 | 5:32 | |
| We Worship You | Unfit For Swine | 04 | 4:12 | |
| You Are Near | Hope Marches On 6-song Demo | 02 | 3:25 | unreleased |
| Your Eyes | The Grafting | 07 | 4:25 | track 05 on first pressing |
| Your Will | Hope Marches On 6-song Demo | 06 | 3:28 | unreleased |